PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g032200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 129aa    MW: 14561.9 Da    PI: 9.5734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g032200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000216183123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++Cg+ F     L  H+r+H
  Sopen06g032200.1 61 HECSYCGEEFVLGQALGGHMRKH 83
                      79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-81783No hitNo description
PfamPF139124.1E-121943IPR007087Zinc finger, C2H2
SMARTSM003550.461941IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.911946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-45684IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.6E-106185IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1596188IPR007087Zinc finger, C2H2
SMARTSM003550.166183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MANCVSILEK NSSLSRRFFE CKTCKKQFES FQALGGHRAS HKKPKLVVLP SDSIKSNAKK  60
HECSYCGEEF VLGQALGGHM RKHRDKTKEK NTYKSSEKKF CLDLNLTPYE NDQLTLGIIP  120
ACTVVHSLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078584.12e-92PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD45e-28ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM1CZ262e-79M1CZ26_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000779335e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-32C2H2 family protein